Peer Reviewed

Systems Medicine

of Infectious Diseases

Research Group

Computational and Applied Mathematics

Peer Reviewed Articles

 

2018

 

42. M. Samir, M. Hamed, F. Abdallah, V.K. Nguyen, E.A. Hernandez-Vargas, F. Seehusen, W. Baumgartner, A. Hussein, A.A. Ali, and F. Pessler. An Egyptian HPAI H5N1 isolate from clade 2.2.1.2 is highly pathogenic in an experimentally infected domestic duck breed (Sudani duck). Transboundary and Emerging Diseases. 1-15, 2018 [PDF]

 

2017

 

41. V.K. Nguyen and E.A. Hernandez-Vargas. Windows of opportunity for Ebola virus infection treatment and vaccination. Scientific Reports. 7(8975):1-10, 2017 [PDF]

 

40. E.A. Hernandez-Vargas. Modeling Kick-Kill strategies towards HIV cure. Frontiers in Immunology. 2017 [PDF]

 

39. C. Villaseñor, J.D. Rios, N. Arana-Daniel, A.Y. Alanis, C. Lopez-Franco, and E.A. Hernandez-Vargas. Germinal Center Optimization Applied to Neural Inverse Optimal Control for an All-Terrain Tracked Robot. Applied Sciences. 8(1):1-16, 2017 [PDF]

 

38. C.E. Torres-Cerna, A.Y. Alanis, I. Poblete-Castro, and E.A. Hernandez-Vargas. Batch Cultivation Model for Biopolymer Production. Chemical and Biochemical Engineering Quarterly Journal. 31(1):89-99, 2017 [PDF]

 

37. G. Hernandez-Mejia, A.Y. Alanis, and E.A. Hernandez-Vargas. Inverse optimal impulsive control based treatment of influenza Infection. Proceedings of the 20th IFAC World Congress, Toulouse, France. 2017 [PDF]

 

2016

 

36. S. Duvigneau, N. Sharma-Chawla, A. Boianelli, S. Stegemann-Koniszewski, V. K. Nguyen, D. Bruder, and E.A. Hernandez-Vargas. Hierarchical effects of pro-inflammatory cytokines on the post-influenza susceptibility to pneumococcal coinfection. Scientific Reports. Vol. 6(37045):1-11, 2016 [PDF]

 

35. A. Boianelli, N. Sharma-Chawla, D. Bruder, and E.A. Hernandez-Vargas. Oseltamivir PK/PD Modeling and Simulation to Evaluate Treatment Strategies against Influenza-Pneumococcus Coinfection. Frontiers in Cellular and Infection Microbioly. Vol. 6(60):1-11, 2016 [PDF]

 

34. V. K. Nguyen, F. Klawonn, R. Mikolajczyk, and E. A. Hernandez-Vargas. Analysis of practical identifiability of a viral infection model. Plos One. Vol. 11(12): e0167568, 2016 [PDF]

 

33. Carlos E. Torres-Cerna, A. Y. Alanis, I. Poblete-Castro, M. Bermejo-Jambrina, and E. A. Hernandez-Vargas. A Comparative Study of Differential Evolution Algorithms for Parameter Fitting Procedures. Proceedings in IEEE World Congress on Computational Intelligence. 2016 [PDF]

 

2015

 

32. A. Boianelli, V. K. Nguyen, T. Ebensen, K. Schulze, E. Wilk, N. Sharma, S. Stegemann-Koniszewski, D. Bruder, F. Toapanta, C. A. Guzman, M. Meyer-Hermann, and E.A. Hernandez-Vargas. Modeling Influenza Virus Infection: A Roadmap for Influenza Research. Viruses. Vol. 7:5274-5304, 2015 [PDF]

 

31. V.K. Nguyen, S. C. Binder, A. Boianelli, M. Meyer-Hermann, and E.A. Hernandez-Vargas. Ebola Virus Infection Modelling and Identifiability Problems. Frontiers Microbiology. Vol. 6(257): 1-11, 2015 [PDF]

 

30. S. C. Binder, E.A. Hernandez-Vargas, and M. Meyer-Hermann. Reducing complexity: An iterative strategy for parameter determination in biological networks. Computer Physics Communications, Vol.190, 15-22, 2015 [PDF]

 

29. V. K. Nguyen and E.A. Hernandez-Vargas. Identifiability Challenges in Mathematical Models of Viral Infectious Diseases. Proceedings of the 17th IFAC Symposium on System Identification, Beijing, China. 1–6, 2015 [PDF]

 

2014

 

28. S. Jaafoura,M. G. de Goër de Herve, E.A. Hernandez-Vargas, H. Hendel-Chavez, M. Abdoh, M.C. Mateo, R. Krzysiek,M. Merad, R. Seng, M. Tardieu, J. F. Delfraissy, C. Goujard, and Y. Taoufik. Progressive contraction of the latent HIV reservoir around a core of less-differentiated ​CD4+ memory T Cells. Nature Communications, Vol.5, 5407, 1-8, 2014 [PDF]

 

27. E.A. Hernandez-Vargas, E. Wilk, L. Canini, F. Toapanta, S. Binder, A. Uvarovskii, T. Ross, C.A. Guzman, A.S. Perelson, and M. Meyer-Herman. Effects of aging on influenza virus infection dynamics. Journal of Virology, Vol.88 (8), 4123–4131, 2014 [PDF]

 

26 M. Haering, A. Hördt, M. Meyer-Hermann and E.A. Hernandez-Vargas. Computational study to determine when to initiate and alternate therapy in HIV infection. BioMed Research International, Vol. 2014, 2014 [PDF]

 

25. E.A. Hernandez-Vargas, P. Colaneri, R.H. Middleton. Switching Strategies to Mitigate HIV Mutation. IEEE Transactions on Control Systems Technology, Vol. 22 (4), 1623-1628, 2014 [PDF]

 

2013

 

24. E.A. Hernandez-Vargas, P. Colaneri, and R. Middleton. Optimal therapy scheduling for a simplified HIV infection model. Automatica, Vol.49 (9), 2874–2880, 2013 [PDF]

 

23. E.A. Hernandez-Vargas and R. Middleton. Modeling the three stages in HIV infection. Journal of Theoretical Biology, Vol. 320, 33-40, 2013 [PDF]

 

22. A.Y. Alanis, M. Hernandez-Gonzalez, and E.A. Hernandez-Vargas. Observers for biological systems. Applied Soft Computing, Vol.24, 1175–1182, 2014 [PDF]

 

21. C. Schmeitz, E.A. Hernandez-Vargas, R. Flyer, A.H. Guse, and M. Meyer-Hermann. A mathematical model of T lymphocyte calcium dynamics derived from single transmembrane protein properties. Frontiers in immunology, Vol. 4, 2013 [PDF]

 

2012

 

20. M. Hernandez-Gonzalez, A. Alanis, and E.A. Hernandez-Vargas, Decentralized Discrete-Time Neural Control for a Quanser 2-DOF Helicopter. Applied Soft Computing, Vol. 12, 2462–2469, 2012 [PDF]

 

19. E.A. Hernandez-Vargas, P. Colaneri, and R. Middleton. Sub-optimal switching with dwell time constraints for control of viral mutation. IEEE Conference on Decision Control, Maui, Hawaii, 2012 [PDF]

 

18. E.A. Hernandez-Vargas and M. Meyer-Hermann. Innate immune system dynamics to influenza virus. IFAC Symposium on Biological and Medical Systems, Budapest, 2012 [PDF]

 

17. E.A. Hernandez, A.Y. Alanis, and E. N. Sanchez. Discrete-time neural observer for HIV infection dynamics. Word Automation Congress, Puerto Vallarta, Mexico 2012 [PDF]

 

2011

 

16. J. Ferreira, E.A. Hernandez-Vargas, and R. Middleton. Computer Simulation of Structured Treatment Interruption for HIV infection. Computers Methods and Programs in Biomedicine, Vol. 104 (2), 50-61 2011 [PDF]

 

15. E.A. Hernandez-Vargas, Dhagash Mehta, and R. Middleton. Towards modeling HIV long term behavior. IFAC World Congress, Milan, Italy, 2011 [PDF]

 

14. E.A. Hernandez-Vargas, R. Middleton, and P. Colaneri. Optimal and MPC switching strategies for mitigating viral mutation escape. IFAC World Congress, Milan, Italy, 2011 [PDF]

 

13. S. Zhan, E.A. Hernandez-Vargas, and R. Middleton. A mathematical study on immune activation and related dynamics in HIV infection. IEEE Conference on Decision Control, Orlando, 2011 [PDF]

 

2010

 

12. E.A. Hernandez-Vargas, P. Colaneri, R. Middleton, and F. Blanchini. Discrete-time control for switched positive systems with application to mitigating viral escape. International Journal of Robust and Nonlinear Control, Vol. 21 (10), 1093–1111, 2010 [PDF]

 

11. A. Alanis, E. N. Sanchez, A. Loukianov, and E.A. Hernandez-Vargas. Discrete-time recurrent high order neural networks for nonlinear identification. Journal of the Franklin Institute, Vol. 347 (7), 1253-1265, 2010 [PDF]

 

10. E.A. Hernandez-Vargas, P. Colaneri, R. Middleton, and F. Blanchini. Dynamic optimization algorithms to mitigate HIV escape. IEEE Conference on Decision Control, Atlanta, 2010 [PDF]

 

9. R. Middleton, P. Colaneri, E.A. Hernandez-Vargas, and F. Blanchini. Continuous-time optimal control for switched positive systems with application to mitigating viral escape. IFAC Symposium on Nonlinear Control Systems, Bologna, Italy, 2010 [PDF]

 

2009

 

8. E.A. Hernandez-Vargas, E. N. Sanchez, C. Cadet, and J. F. Beteau. Neural observer based hybrid intelligent scheme for activated sludge wastewater treatment. Chemical and Biochemical Engineering Quarterly Journal, Vol. 23 (4), 2009 [PDF]

 

7. E.A. Hernandez-Vargas, A. Alanis, E. N. Sanchez, and M. Hernandez-Gonzalez. Supervisor difuso funcional aplicado a una planta urbana de tratamiento de aguas residuales basado en un observador neuronal. Ingeniería Química, Vol. 36, 2009 [PDF]

 

2008

 

6. E.A. Hernandez, E.N. Sanchez, C. Cadet, and J.F. Beteau. Observer based hybrid intelligent control for activated sludge wastewater treatment. Latin American Congress of Automatic Control, Merida, Venezuela, 2008 [PDF]

 

5. E. N. Sanchez, E.A. Hernandez, C. Cadet, and J. F. Beteau. Hybrid intelligent control for activated sludge wastewater treatment. IEEE Multi-Conference on Systems and Control, San Antonio, Texas, 2008 [PDF]

 

4. E. N. Sanchez, E.A. Hernandez, C. Cadet, and J. F. Beteau. Discrete-time recurrent high order neural observer for activated sludge wastewater treatment. IEEE World Congress on Computational Intelligence, Hong Kong, 2008 [PDF]

 

2007

 

3. J.G. Segovia-Hernandez, E.A. Hernandez–Vargas, and J.A. Marquez–Muñoz. Control Properties of Thermally Coupled Distillation Sequences for Different Operating Conditions. Computers and Chemical Engineering Journal, Vol. 31, 867-874, 2007 [PDF]

 

2006

 

2. E. A. Hernandez–Vargas, J.G. Segovia- Hernandez, S. Hernandez, and A. Jimenez. Dynamic analysis of distillation with thermal coupling for different operating conditions. Distillation and Absorption 2006, IChemeE Symp. No. 152, Edited by Eva Sorensen, UK, 728-736. ISBN:0-85295-505-7, 2006 [PDF]

 

2005

 

1. J.G. Segovia-Hernandez, E.A. Hernandez–Vargas, J.A. Marquez–Muñoz, S. Hernandez, and A. Jimenez. Control properties and thermodynamic analysis of two alternatives to thermally coupled distillation systems with side columns. Chemical and Biochemical Engineering Quarterly Journal, Vol.19 (4), 325-332, 2005 [PDF]