Machine Learning for Multiscale Analysis of Biomedical Data

Selected Articles

    For a complete list of publications click here

    • Tracking influenza A virus infection in the lung from hematological data with machine learning. 

              mSystems. 2022 [Link]

              Covered by the German newspaper Frankfurter Allgemeine

              Covered by FIAS

    • Distinct immunological and molecular signatures underpinning influenza vaccine responsiveness in the elderly.

              Nature Communications. 2022 [Link]

    • In-host Mathematical Modelling of COVID-19 in Humans.

              Annual Reviews in Control. 2020 [Link]

    • Passivity-based Inverse Optimal Impulsive Control for Influenza Treatment in the Host. 

              IEEE Transactions on Control Systems Technology. 2020 [Link]

    • PDEparams: Parameter fitting toolbox for partial differential equations in Python.

              Bioinformatics. 2020 [Link]

    • Multiscale Model Within-host and Between-host for Viral Infectious Diseases. 

             Journal of Mathematical Biology. 2018   [Link]  [Preprint]

    • Hierarchical effects of pro-inflammatory cytokines on the post-influenza susceptibility to pneumococcal coinfection

              Scientific Reports. 2016. [Link]

              Preprint in BioRxiv

              Covered by Laborjournal online 

              Covered by Helmholtz Centre of Infection Research

    • Progressive contraction of the latent HIV reservoir around a core of less-differentiated ​CD4+ memory T cells.      Nature Communications. 2014 [Link]

    • Effects of aging on influenza virus infection dynamics.                                                                                                      Journal of Virology. 2014 [Link] 

              Covered by Helmholtz  Cenre of Infection Research

    • Optimal therapy scheduling for a simplified HIV infection model. 

              Automatica. 2013  [Link]

    • The three stages in HIV infection. 

             Journal of Theoretical Biology. 2013  [Link]

    • Discrete-time control for switched positive systems with application to mitigating viral escape. 

              International Journal of Robust and Nonlinear Control. 2010 [Link]