Publications

Systems Medicine       

of Infectious Diseases

Research and Consulting Group

Machine Learning for Multiscale Analysis of Biomedical Data

Selected Articles



    • In-host Mathematical Modelling of COVID-19 in Humans.  

              Annual Reviews in Control. 2020 [Link]



    • Passivity-based Inverse Optimal Impulsive Control for Influenza Treatment in the Host. 

              IEEE Transactions on Control Systems Technology. 2020 [Link]


    • PDEparams: Parameter fitting toolbox for partial differential equations in Python.

              Bioinformatics. 2020 [Link]


    • A new view of multiscale stochastic impulsive systems for modeling and control of epidemics.                              Annual Reviews in Control. 2019 [Link] 


    • Multiscale Model Within-host and Between-host for Viral Infectious Diseases. 

             Journal of Mathematical Biology. 2018   [Link]  [Preprint]


    • Hierarchical effects of pro-inflammatory cytokines on the post-influenza susceptibility to pneumococcal coinfection

              Scientific Reports. 2016. [PDF]

              Preprint in BioRxiv

              Covered by Laborjournal online 

              Covered by Helmholtz Centre of Infection Research


    • Progressive contraction of the latent HIV reservoir around a core of less-differentiated ​CD4+ memory T cells.      Nature Communications. 2014 [PDF]


    • Effects of aging on influenza virus infection dynamics.                                                                                                      Journal of Virology. 2014 [PDF] 

              Covered by Helmholtz   Cenre of Infection Research


    • Optimal therapy scheduling for a simplified HIV infection model. 

              Automatica. 2013  [PDF]


    • The three stages in HIV infection. 

             Journal of Theoretical Biology. 2013  [PDF]


    • Discrete-time control for switched positive systems with application to mitigating viral escape. 

              International Journal of Robust and Nonlinear Control. 2010 [PDF]