Systems Medicine       

of Infectious Diseases

Research and Consulting Group

Machine Learning for Multiscale Analysis of Biomedical Data

Selected Articles

  • Uncovering antibody cross-reaction dynamics in influenza A infections

          Bioinformatics. 2020 

  • Passivity-based Inverse Optimal Impulsive Control for Influenza Treatment in the Host. 

          IEEE Transactions on Control Systems Technology. 2019 [Link]

  • PDEparams: Parameter fitting toolbox for partial differential equations in Python.

          Bioinformatics. 2019 [Link]

  • A new view of multiscale stochastic impulsive systems for modeling and control of epidemics.                              Annual Reviews in Control. 2019 [Link] 

  • Multiscale Model Within-host and Between-host for Viral Infectious Diseases. 

         Journal of Mathematical Biology. 2018   [Link]  [Preprint]

  • Hierarchical effects of pro-inflammatory cytokines on the post-influenza susceptibility to pneumococcal coinfection

          Scientific Reports. 2016. [PDF]

          Preprint in BioRxiv

          Covered by Laborjournal online 

          Covered by Helmholtz Centre of Infection Research

  • Progressive contraction of the latent HIV reservoir around a core of less-differentiated ​CD4+ memory T cells.      Nature Communications. 2014 [PDF]

  • Effects of aging on influenza virus infection dynamics.                                                                                                      Journal of Virology. 2014 [PDF] 

          Covered by Helmholtz   Cenre of Infection Research

  • Optimal therapy scheduling for a simplified HIV infection model. 

          Automatica. 2013  [PDF]

  • The three stages in HIV infection. 

         Journal of Theoretical Biology. 2013  [PDF]

  • Discrete-time control for switched positive systems with application to mitigating viral escape. 

          International Journal of Robust and Nonlinear Control. 2010 [PDF]